Testing the Microbiome Impact of a Skincare Product: Key Methods and Evaluation Criteria

Femme examine sa peau devant un miroir.
Femme examine sa peau devant un miroir.

Introduction

The skin microbiome has become a major focus in cosmetic science. Many brands now promote products that claim to respect, balance, or support the skin’s natural flora. But how can you scientifically evaluate the impact of a skincare product on the microbiome?

In this article, we explore the main testing methods and key criteria to effectively assess a product’s influence on the microbiome—ensuring credible results and compliant marketing claims.


Why Assess a Product’s Impact on the Skin Microbiome?

The skin microbiome is a delicate and diverse ecosystem made up of bacteria, fungi, yeasts, and viruses. It plays a vital role in barrier function, immune response, and overall skin health.

Main Objectives:

  • Confirm that the product does not disrupt microbial balance
  • Support microbiome-related claims such as “microbiome-friendly” or “preserves the skin flora”
  • Demonstrate positive effects, such as increasing beneficial bacteria or reducing harmful ones
  • Guide the development of products for sensitive, acne-prone, or atopic skin

Key Methods to Evaluate Microbiome Impact

1. DNA Sequencing (NGS – Next Generation Sequencing)

🔬 What is it?

NGS is the gold standard for microbiome analysis. It identifies and quantifies skin microorganisms by analyzing their DNA—typically the 16S rRNA gene for bacteria.

✅ Advantages:

  • Highly accurate and comprehensive
  • Measures bacterial diversity and relative abundance
  • Detects subtle shifts in the skin’s microbial ecosystem

⚠️ Limitations:

  • Higher cost
  • Requires bioinformatics expertise to interpret data

2. Microbial Culture

🔬 What is it?

A classical method that involves culturing microorganisms from skin swabs on nutrient-rich media.

✅ Advantages:

  • Simple and cost-effective
  • Allows identification and enumeration of specific strains
  • Useful for monitoring known species

⚠️ Limitations:

  • Cannot detect non-culturable bacteria
  • Underrepresents the full diversity of the microbiome

3. qPCR (Quantitative Polymerase Chain Reaction)

🔬 What is it?

qPCR is a targeted DNA amplification technique that quantifies specific microbial species.

✅ Advantages:

  • Highly sensitive and specific
  • Fast and cost-effective
  • Ideal for tracking known organisms (e.g. C. acnes, S. epidermidis)

⚠️ Limitations:

  • Limited to predefined microbial targets
  • Not suitable for full microbiome profiling

Key Criteria for a Reliable Microbiome Study

🎯 1. Choosing the Right Study Population

  • Skin microbiome composition varies based on skin type (normal, oily, sensitive, acne-prone, etc.)
  • Use a representative panel for more relevant data

🧪 2. Study Design

  • Typically before/after product application,
  • Use of split-face or monosite protocols,
  • Minimum test duration: 2 to 4 weeks

📊 3. Data Interpretation

  • Analyze alpha diversity (microbial richness) and beta diversity (variation between individuals)
  • Monitor key species evolution
  • Correlate microbiome changes with clinical parameters (e.g., redness, dryness, blemishes)

📁 4. Claims Documentation

  • Include findings in the Product Information File (PIF)
  • Adapt claims wording to match scientific evidence:
    • ❌ Avoid vague terms like “rebalances” unless well-supported
    • ✅ Use verifiable statements like “does not disrupt the skin microbiome”

Conclusion

Assessing the impact of skincare products on the microbiome is now a key step in product development, claim validation, and consumer trust. With advanced methods like NGS, qPCR, and classical culture, brands can scientifically substantiate their microbiome-related claims and ensure product compatibility with the skin’s natural ecosystem.

In a market where consumers are increasingly aware of skin health and microbiome science, microbiome-friendly skincare is not just a trend—it’s a powerful value proposition.

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